Shallow Thoughts

Backing up a file system

I upgraded my system to the latest Ubuntu, "Gutsy Gibbon", recently. Of course, it's always best to make a backup before doing a major upgrade. In this case, the goal was to back up my root partition to another partition on the same disk and get it working as a bootable Ubuntu, which I could then upgrade, saving the old partition as a working backup. I'll describe here a couple of silly snags I hit, to save you from making the same mistakes.

Linux offers lots of ways to copy filesystems. I've used tar in the past, with a command like (starting in /gutsy): tar --one-file-system -cf - / | tar xvf - > /tmp/backup.out but cp seemed like an easier way, so I want to try it.

I mounted my freshly made backup partition as /gutsy and started a cp -ax /* /gutsy (-a does the right thing for permissions, owner and group, and file type; -x tells it to stay on the original filesystem). Count to ten, then check what's getting copied. Whoops! It clearly wasn't staying on the original filesystem.

It turned out my mistake was that /*. Pretty obvious in hindsight what cp was doing: for each entry in / it did a cp -ax, staying on the filesystem for that entry, not on the filesystem for /. So /home, /boot, /proc, etc. all got copied. The solution was to remove the *: cp -ax / /gutsy.

But it wasn't quite that simple. It looked like it was working -- a long wait, then cp finished and I had what looked like a nice filesystem backup. I adjusted /gutsy/etc/fstab so that it would point to the right root, set up a grub entry, and rebooted. Disaster! The boot hung right after Attached scsi generic sg0 type 0 with no indication of what was wrong.

Rebooting into the old partition told me that what's supposed to happen next is: * Setting preliminary keymap... But the crucial error message was actually several lines earlier: Warning: unable to open an initial console. It hadn't been able to open /dev/console.

Now, in the newly copied filesystem, there was no /dev/console: in fact, /dev was empty. Nothing had been copied because /dev is a virtual file system, created by udev.

But it turns out that the boot process needs some static devices in /dev, before udev has created anything. Of course, once udev's virtual filesystem has been mounted on /dev, you can no longer read whatever was in /dev on the root partition in order to copy it somewhere else. But udev nicely gives you access to it, in /dev/.static/dev. So what I needed to do to get my new partition booting was: cp -ax /dev/.static/dev/ /gutsy/dev/ With that done, I was able to boot into my new filesystem and upgrade to Gutsy.

Tags: linux, ubuntu, backups
[ 22:48 Nov 30, 2007    More linux | permalink to this entry ]

The Joys of Shell Pipelines ...

A friend called me for help with a sysadmin problem they were having at work. The problem: find all files bigger than one gigabyte, print all the filenames, add up all the sizes and print the total. And for some reason (not explained to me) they needed to do this all in one command line.

This is Unix, so of course it's possible somehow! The obvious place to start is with the find command, and man find showed how to find all the 1G+ files:

find / -size +1G

(Turns out that's a GNU find syntax, and BSD find, on OS X, doesn't support it. I left it to my friend to check man find for the OS X equivalent of -size _1G.)

But for a problem like this, it's pretty clear we'd need to get find to execute a program that prints both the filename and the size. Initially I used ls -ls, but Saz (who was helping on IRC) pointed out that du on a file also does that, and looks a bit cleaner. With find's unfortunate syntax, that becomes:

find / -size +1G -exec du "{}" \;

But now we needed awk, to collect and add up all the sizes while printing just the filenames. A little googling (since I don't use awk very often) and experimenting led to the final solution:

find / -size +1G -exec du "{}" \; | awk '{print $2; total += $1} END { print "Total is", total}'

Ah, the joys of Unix shell pipelines!

Update: Ed Davies suggested an easier way to do the same thing. turns out du will handle it all by itself: du -hc `find . -size +1G` Thanks, Ed!

Tags: linux, shells, backups, pipelines
[ 16:53 Dec 29, 2006    More linux | permalink to this entry ]